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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Tommy Bannon | 14th | Mario Berlanga | 1st | 8th |
| First Basemen | Ferdie de Bruin | 18th | Raul Torres | 4th | 11th |
| Second Basemen | J.J. D'Avignon | 4th | Tied for 17th | 17th | |
| Third Basemen | Fernando Medina | 3rd | Willie Ortiz | Tied for 8th | 2nd |
| Shortstops | Isac Nielsen | Tied for 9th | Arturo Boera | Tied for 15th | Tied for 12th |
| Left Fielders | Yaichiro Nagamine | 1st | Mike Scarborough | 2nd | 1st |
| Center Fielders | Tied for 17th | Jason Peterson | 11th | 18th | |
| Right Fielders | Adam Langley | 10th | Matt Meuschke | Tied for 7th | 8th |
| Starting Pitchers | Corey Martin | 5th | Bryce Jacobs | 6th | 4th |
| Relievers | Cory Garrett | 18th | Eduardo Moreno | 17th | 18th |
| Closers | Nick Jones | 14th | Matt Richardson | 9th | 10th |
