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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Yi-mou Dee | 3rd | Esteban Avila | 2nd | 3rd |
| First Basemen | Ronald Badir | 15th | Aubrey Morales | Tied for 10th | 12th |
| Second Basemen | Mike Coughlin | 10th | Bobby Arreguin | 1st | 7th |
| Third Basemen | Jose Castro | 13th | Enrique Gomez | Tied for 8th | 10th |
| Shortstops | John Figgins | 16th | Bernie Rioja | 7th | 12th |
| Left Fielders | Nathan Farris | 15th | Randy Chenault | Tied for 10th | 15th |
| Center Fielders | Bobby Fernandez | 10th | Sterling Harvey | 17th | 16th |
| Right Fielders | Ricky Mayhall | 1st | Danny Gabriele | 11th | 9th |
| Starting Pitchers | Manny Orellana | 4th | Javon Scott | 12th | 2nd |
| Relievers | Bang-xao Chi | 5th | Justin Guthrie | 1st | 1st |
| Closers | Bang-xao Chi | 6th | Jerry de Jesus | 16th | 14th |
