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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Fernando Marquez | 12th | Robert DeRosa | 4th | 8th |
| First Basemen | Aaron Shelby | 4th | Fernando Rivera | 7th | 3rd |
| Second Basemen | Dewey Duggan | 2nd | Brad Allen | 15th | 14th |
| Third Basemen | Takanori Umeda | 7th | Sam Abel | 16th | 17th |
| Shortstops | Sandy Almazan | 16th | Raul Lara | Tied for 7th | 17th |
| Left Fielders | Jonathan Thornton | 4th | Hector Salazar | 1st | 4th |
| Center Fielders | Ryan Burton | 1st | Kyle Webber | Tied for 15th | 1st |
| Right Fielders | Kevin Brown | 1st | Pat Bauer | 13th | 9th |
| Starting Pitchers | Jesse Steele | 2nd | Matt Dunn | 16th | 2nd |
| Relievers | Steve Rossi | 9th | George Hale | 18th | 15th |
| Closers | Won-keun Baek | 1st | Chris Judge | 7th | 1st |
