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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Dan Wood | 7th | Mike MacNeill | Tied for 5th | 5th |
| First Basemen | Kyle Boylan | 11th | Alan Reid | 11th | 13th |
| Second Basemen | Ryan Lunsford | 14th | Ryan Ramsdell | 13th | 14th |
| Third Basemen | Joe Farley | 11th | 13th | 15th | |
| Shortstops | Tom Himes | 5th | Joel Ferris | 9th | 7th |
| Left Fielders | Bill Hibshman | 13th | 18th | 18th | |
| Center Fielders | Jim Crosby | 13th | Justin Shotwell | 4th | 6th |
| Right Fielders | Kai Free | 14th | Kai Free | Tied for 1st | 7th |
| Starting Pitchers | Jon Pichardo | 11th | Danny Gonzalez | 14th | 10th |
| Relievers | Matt Mellon | 16th | Fernando Reyes | 3rd | 9th |
| Closers | Nick Green | 12th | Fernando Reyes | 5th | 8th |
