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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jonathan Zahorik | 16th | Sherman Martinez | 11th | 16th |
| First Basemen | Collin Huante | 2nd | Steve Olsen | Tied for 3rd | 2nd |
| Second Basemen | Johnny Stokes | 1st | Takekazu Yamamoto | 16th | 12th |
| Third Basemen | Tim Brenner | 5th | Jeremy Martin | 4th | 5th |
| Shortstops | Andy Stamer | 14th | Luis Gonzalez | Tied for 3rd | 11th |
| Left Fielders | Alex Cosme | 2nd | Miguel Estrada | Tied for 3rd | 2nd |
| Center Fielders | Jeremy Richardson | 15th | Carlos Ibarra | Tied for 1st | 5th |
| Right Fielders | Wing-kit Chen | 11th | Brad Miller | Tied for 5th | 6th |
| Starting Pitchers | Evan Rodriguez | 2nd | Walt Bowers | 13th | 4th |
| Relievers | Josh Pizzo | 1st | Hector Castillo | 2nd | 1st |
| Closers | Josh Pizzo | 3rd | Hector Castillo | 8th | 1st |
