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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jay Qualls | 7th | Dan Wood | 6th | 6th |
| First Basemen | David Cruz | 18th | Sergio Garcia | 14th | 17th |
| Second Basemen | Takahiro Nishimoto | 14th | 17th | 16th | |
| Third Basemen | Angelo Vera | 1st | Travis Holmes | Tied for 1st | 1st |
| Shortstops | Sean Holland | 8th | Tied for 9th | 10th | |
| Left Fielders | Eric Dehn | 1st | Javy Nieves | 12th | 6th |
| Center Fielders | Josh McBride | 12th | Justin Shotwell | 4th | 4th |
| Right Fielders | Jonathan Marquez | 17th | Rick Urbina | 9th | 12th |
| Starting Pitchers | Chris Goyer | 18th | Stephen Murphy | 10th | 13th |
| Relievers | Scott Carlson | 11th | Fernando Reyes | 5th | 7th |
| Closers | Matt Mellon | 9th | Fernando Reyes | 4th | 6th |
