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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Matt Baker | 11th | Evan Case | 11th | 11th |
| First Basemen | Steve Contreras | 6th | Mike White | 6th | 6th |
| Second Basemen | Josh Westrick | 1st | Morgan Wilby | 3rd | 1st |
| Third Basemen | Rich Bamforth | 6th | Danny Malave | 11th | 6th |
| Shortstops | Matt Lopresti | 7th | Keith Reiss | Tied for 6th | 6th |
| Left Fielders | Vitaliano Brancati | 3rd | Michael Moulin | 2nd | 2nd |
| Center Fielders | 11th | Damien Thibaud | 4th | 11th | |
| Right Fielders | 11th | Mike Baiza | 5th | 11th | |
| Starting Pitchers | Jonathan Faulk | 7th | Matt Baird | 12th | 7th |
| Relievers | Justin Ferguson | 9th | Jon Walter | 3rd | 9th |
| Closers | Justin Ferguson | 12th | Alex Gonzales | 3rd | 9th |
