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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | David Quezada | 3rd | Bob Dickison | 8th | 3rd |
| First Basemen | James Queen | 4th | Nate Rohr | 4th | 4th |
| Second Basemen | Ruben Franco | 12th | Kris Cooper | 8th | 11th |
| Third Basemen | Jimmy O'Connor | 5th | Aaron Oppermann | 3rd | 6th |
| Shortstops | Wayne Williams | 11th | Ryan Grimm | 1st | 11th |
| Left Fielders | Ben Mullaly | 5th | Jon Crosier | 12th | 6th |
| Center Fielders | Manny Mendoza | 7th | Steve Wilson | 1st | 6th |
| Right Fielders | Bryan Bassett | 3rd | Marco Morales | 11th | 4th |
| Starting Pitchers | Jon Person | 9th | John Jackson | 10th | 9th |
| Relievers | Erik Nester | 2nd | Alex Romero | 2nd | 2nd |
| Closers | Jon Romano | 5th | Paul Rudolph | 11th | 8th |
