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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Mark Buchholz | 4th | Bob Dickison | 4th | 4th |
| First Basemen | 12th | James Queen | Tied for 1st | 12th | |
| Second Basemen | Tony Gant | 11th | Alphonse Chapa | 9th | 11th |
| Third Basemen | Randy Mills | 12th | Aaron Oppermann | 4th | 12th |
| Shortstops | Tied for 11th | Ryan Grimm | 1st | 11th | |
| Left Fielders | Ben Mullaly | 3rd | Jon Crosier | 11th | 3rd |
| Center Fielders | 12th | Marco Morales | 4th | 12th | |
| Right Fielders | 12th | Raul Arredondo | 10th | 12th | |
| Starting Pitchers | Sam Jacobs | 10th | John Jackson | 11th | 11th |
| Relievers | Rich Primmer | 1st | Billy Green | 3rd | 1st |
| Closers | Andres Quintana | Tied for 8th | Jake Ottaviano | 8th | 9th |
